Prediction IncluDinG INactivity (PIDGIN) Version 4

Release:v4.1 Date:Jun 10, 2021

Author : Lewis Mervin (lewis.mervin@cantab.net), Layla Hosseini-Gerami (lh605@cam.ac.uk), Maria-Anna Trapotsi (mat64@cam.ac.uk)

Supervisor : Dr. A. Bender

Contents

• Overview of PIDGINv4
  • Introduction
  • Contributing
  • License
  • Citing PIDGIN
  • References
• Setup and Installation
  • Required dependencies
  • Install with Conda
  • Filetree structure
• Usage and Examples
  • Command Line Arguments
  • Getting started
  • Extended functionality
  • Enrichment Predictions
• Developer Notes
  • Warnings and Errors
  • Contributing Code
  • Documentation Usage